GTCTG GTTTCTGGGG AACAACGGTG W GGTGAACTAC AGTAGGCTCC TCTGA W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37652441 | NES09029000 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | A | A | A | T | T | A | A | A | T | A | A | ||||
ss45230877 | mCV22536085 | ABI | CRAMUS_MOUSE | f | SNP | T | T | T | A | T | ||||||||||||||
ss147308881 | ENSMUSSNP3394007 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | ||||||||||||||||||
ss320471126 | CHEV_2_118488803 | CHEVERUD | SCREENING_POP | f | SNP | A | T | |||||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs3149732 | SNP | T | T | T | T | T | A | A | A | A | T | T | A | A | A | A | T | A | T | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37652441 | NES09029000 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr2:118493548 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12085 | CpG island 12085 | 153 bp proximal | ||||||
Gm75659 | predicted gene, 75659 | within coordinates | ||||||
Pak6 | p21 (RAC1) activated kinase 6 | 236 bp upstream | ||||||
Rr55423 | regulatory region 55423 | within coordinates | ||||||
Tssr19565 | transcription start site region 19565 | 168 bp upstream | ||||||
Tssr19566 | transcription start site region 19566 | 244 bp upstream | ||||||
Tssr19567 | transcription start site region 19567 | 655 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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