rs31497537 SNP Detail

Summary

• ID
  rs31497537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93271716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA ACCTAGTCTT AAAGCTCCGA
  R
  GTTGACAGGC GAGGGGGCAG GGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45039455	mCV27561195	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss144957788	ENSMUSSNP5049926	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss319843455	CHEV_1_95240571	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31497537					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93271716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	479 bp upstream
Ppp1r7	protein phosphatase 1, regulatory subunit 7	within coordinates
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	1032 bp downstream
Rr396176	regulatory region 396176	270 bp downstream
Tssr163	transcription start site region 163	303 bp downstream
Tssr8169	transcription start site region 8169	322 bp downstream
Tssr13015	transcription start site region 13015	1422 bp upstream
Tssr13016	transcription start site region 13016	1397 bp upstream
Tssr13017	transcription start site region 13017	1374 bp upstream
Tssr13018	transcription start site region 13018	1363 bp upstream
Tssr13019	transcription start site region 13019	1191 bp upstream
Tssr13020	transcription start site region 13020	1105 bp upstream
Tssr13021	transcription start site region 13021	1083 bp upstream
Tssr13022	transcription start site region 13022	470 bp upstream