rs31497558 SNP Detail

Summary

• ID
  rs31497558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24182547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGAGA GACAGAGAGA
  CAGAGAGACA GAGAGAAAGA GAGAGAAAGT CAAAAACTAA GGTGGAGAGC TATTGAGGAA
  GATACTTGTT ATCAGCATCT GGCTTCTGCA TCACACGCAC ATGCGCGCGT GCACACACGC
  GCACACACAC ACAAGAGCAT GAGCGCATAC ATACCACAGG TAATTGTTCC TTAGTGTCAT
  Y
  TGTATTTAGT GTCATCTGTC TACTGAAACT GAGCATGTGT GCAGAGCCCA CTGGTATTTA
  GTCCTGTCTC GGTAGCCTTT TCCTATCTTT ATGTTATAGT AAATTTTTGT TTTGTTTTGG
  TTTTTGAAAC AGGACTTCTT CTGTATCCCT GGCTGTCCTA GAACTTGCTC TGTAGACCAG
  ACTGGCCTCA AAATAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49245214	NES12681843	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31497558					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49245214	NES12681843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24182547 () rs orientation: forward

Symbol	Name	Function Class
Rr393422	regulatory region 393422	1280 bp upstream
Rr405565	regulatory region 405565	649 bp upstream
Rr534881	regulatory region 534881	1660 bp distal
Rr534882	regulatory region 534882	1787 bp distal
Rr534883	regulatory region 534883	477 bp proximal
Rr534884	regulatory region 534884	596 bp proximal