rs31498000 SNP Detail

Summary

• ID
  rs31498000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181338505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGTCCTTG GTCGCAGTCT CACTTCGGAC TTTCTCTTGC
  TCCTTCTCCA AGGTCTGTAT TTTCACGTCC TGGCCCTCCT TTATCTTGTA AACTGGCTTC
  M
  GTGCCTGCAA CTGCTGCTTC AAATCCTTCT GGGTCTTTCT GCCCTGCAGG AGCTGGGCTT
  GAAGAGCTGC GTTTCTCTGG TTGTATCTGG ATGCCAATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45039593	mCV25243966	ABI	CRAMUS_MOUSE	f	SNP		A	A					C
ss46727809	NES10639744	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	A	A	A	A
ss146396631	ENSMUSSNP4755473	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31498000					SNP	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46727809	NES10639744	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181338505 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	Coding-NonSynonymous
Cpgi1136	CpG island 1136	76 bp distal
Rr424762	regulatory region 424762	501 bp proximal
Rr424763	regulatory region 424763	544 bp proximal
Rr424764	regulatory region 424764	1501 bp proximal