rs3149841 SNP Detail

Summary

• ID
  rs3149841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118530907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TCTCTGGCCC CTGCAAAAAC
  Y
  GGTTTCCGAC TTCCTACGCT TCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37652307	NES09028401	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		C	T		T	C
ss45316397	mCV22538171	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss147310123	ENSMUSSNP1539634	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320471362	CHEV_2_118526162	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs3149841					SNP	C	C	C	C	C	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652307	NES09028401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118530907 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12088	CpG island 12088	within coordinates
Cpgi12089	CpG island 12089	1776 bp proximal
Rr397213	regulatory region 397213	within coordinates
Rr563303	regulatory region 563303	91 bp distal
Rr563304	regulatory region 563304	within coordinates