rs3149845 SNP Detail

Summary

• ID
  rs3149845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118532682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC AGAGAAAGGG AGGACTTGGA
  R
  GAATGGGAGA CATCTCAGTA GCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147310153	ENSMUSSNP1623751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320471368	CHEV_2_118527937	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149845					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118532682 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	within coordinates
Cpgi12088	CpG island 12088	1636 bp distal
Cpgi12089	CpG island 12089	1 bp proximal
Rr397213	regulatory region 397213	1773 bp downstream
Rr563303	regulatory region 563303	1866 bp distal
Rr563304	regulatory region 563304	1234 bp distal
Rr563305	regulatory region 563305	576 bp proximal
Rr563306	regulatory region 563306	1263 bp proximal
Rr563307	regulatory region 563307	1752 bp proximal