rs31498620 SNP Detail

Summary

• ID
  rs31498620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77631481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCAGTCA CCGAGAATGT
  ATTCTGACAC CCGCGAGCAT TTCGTCACTT GCTCCAGATC TGGGATCCCA AGTTGGAGCA
  GACGTTTACC CACTACACGT GGCTTAGGAT CCATGGACAC CAGGATAGGG ATGTTTGAGG
  AAGCATCTCA TCTGTCTTTA CATAGAAACA TATGGCCAAC CTTCCTTAGT AACATCAAGC
  Y
  ACAGGGAAGC CACAGCCTGG AGAGAGAGGA GGGGTGGAGC AGCTCTGTCA TGACCCCATC
  ATCACAACTC AGAGATCTGC CTGCCTCTGC CTACCAAGTG CTGGGGCTAC AGGTATGTGC
  TTCCATGCCC AACCCTAAGA AACGCTATAC TCAATGGAAG AACATGGCTT TGTGGCCACC
  AGGCCTCTGC CCTCCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057860	NES12096431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31498620					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057860	NES12096431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77631481 () rs orientation: forward

Symbol	Name	Function Class
Apol8	apolipoprotein L 8	517 bp downstream
Rr505074	regulatory region 505074	1862 bp proximal