rs3149883 SNP Detail

Summary

• ID
  rs3149883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118377327 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACTC CAGCTCTTCC CTCTCACCCA
  Y
  TGCTGTGGTC CCGGACTCCG GCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45247035	mCV23829025	ABI	CRAMUS_MOUSE	r	SNP	G	G	A	G
ss147304451	ENSMUSSNP6708281	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		G
ss320470273	CHEV_2_118372582	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149883					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118377327 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmf	BCL2 modifying factor			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr397207	regulatory region 397207			784 bp downstream
Rr397208	regulatory region 397208			42 bp downstream
Rr563263	regulatory region 563263			641 bp distal
Rr563264	regulatory region 563264			171 bp proximal
Rr563265	regulatory region 563265			703 bp proximal
Rr563266	regulatory region 563266			1972 bp proximal
Tssr19559	transcription start site region 19559			94 bp downstream
Tssr25777	transcription start site region 25777			1677 bp upstream
Tssr25778	transcription start site region 25778			1502 bp upstream
Tssr25779	transcription start site region 25779			172 bp downstream
Tssr25780	transcription start site region 25780			695 bp downstream