rs31499395 SNP Detail

Summary

• ID
  rs31499395
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135304173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT TCACCAATTC CTCACCCAGC
  K
  GAAAGTTCCT GGGGTCCATT TCTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45039827	mCV23630680	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss145532371	ENSMUSSNP7090436	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss319989535	CHEV_1_137273012	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31499395					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135304173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	959 bp distal
Rr12587	regulatory region 12587	773 bp distal
Rr28596	regulatory region 28596	772 bp distal
Rr30685	regulatory region 30685	1628 bp proximal
Shisa4	shisa family member 4	1198 bp upstream
Tssr13848	transcription start site region 13848	1502 bp upstream
Tssr13849	transcription start site region 13849	1489 bp upstream
Tssr13850	transcription start site region 13850	1337 bp upstream
Tssr13851	transcription start site region 13851	1325 bp upstream
Tssr13852	transcription start site region 13852	1207 bp upstream
Tssr13853	transcription start site region 13853	1190 bp upstream
Tssr13854	transcription start site region 13854	1171 bp upstream
Tssr13855	transcription start site region 13855	1158 bp upstream
Tssr13856	transcription start site region 13856	1150 bp upstream