rs3149943 SNP Detail

Summary

• ID
  rs3149943
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118417996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT CACTCTTTGC CACCGTACTC
  K
  TCTGGAATCC AGTTGAGTTG CTAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss46433577	mCV22885655	ABI	CRAMUS_MOUSE	r	SNP	C	C	A
ss147305656	ENSMUSSNP5937937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320470530	CHEV_2_118413251	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs3149943					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118417996 () rs orientation: forward

Symbol	Name	Function Class
Rr563272	regulatory region 563272	1124 bp distal