rs3149956 SNP Detail

Summary

• ID
  rs3149956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118427361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA CAGAATGGGC TATGTACACC
  Y
  CTAAGGAGAC GAGAGAGGGA GGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45352225	mCV22534347	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147305989	ENSMUSSNP2458338	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320470600	CHEV_2_118422616	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3149956					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118427361 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	1331 bp upstream
Cpgi12084	CpG island 12084	1145 bp proximal
Rr397211	regulatory region 397211	1157 bp upstream
Rr563273	regulatory region 563273	841 bp proximal
Rr563274	regulatory region 563274	1342 bp proximal
Tssr19562	transcription start site region 19562	1329 bp upstream
Tssr19563	transcription start site region 19563	1352 bp upstream
Tssr19564	transcription start site region 19564	1391 bp upstream