rs31500338 SNP Detail

Summary

• ID
  rs31500338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180535442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGTCAGCTG ACAGGTAGTT GTGAAGCCAC CTGGAGAGGT GCCAGTAGAG AATTAGCCAT
  CAGCCACACC TAGGGGTGAG GGTGCCGGAG CCTGGAGGGG CCCTTATCAG GGATGAAATC
  TGTCATTTCC CTGAGAAGGG GGCCTGAGTC CAAAGCTTGG GGGCCTTAAA AGTGGTCCTG
  AATGAGCCCC ACATTCACCC GTGATCTTCT GTTTTCAGGG ATCAGAGTCT GAGCACAGCT
  TCTCCAAACT CAGAGGCATG GTGGGATCCT GGGACTGTGT GTGTGTGTGT GTGTGTGTGT
  R
  AGAGAGACAG ACAGACAGAC AGACAGACAG ACAGACAGAT AGAGAGACAG GCAGAAACAG
  AGACAGAGTC AGAGAGTGAC AAGGAAGCCC TGTGTGTGAC CTTTCTACTT AGTTCTGAGT
  TTGGTTTTAC TCACCCCCTC CCCTTTGATA ATTATTAAAC AAGCAACCAC AGAGCTGGGC
  TAGGGAGATG ACTCGTGGGT AAAGTTCTTG TAATGTAATA CTAACCCCGA CAACCTGAGT
  TCGAGTCTAT ACCCCATGAT CCCATGTGCA AAGCTGGAGA GCAATAACCC AGGCTCTCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45039876	mCV24577347	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31500338					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180535442 () rs orientation: forward

Symbol	Name	Function Class
Rr424548	regulatory region 424548	47 bp proximal
Rr424549	regulatory region 424549	1119 bp proximal