rs31500904 SNP Detail

Summary

• ID
  rs31500904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77788202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACTGTT CATGCCACTG
  CATGTGTGTG CGTAGGTGTG TGGTGGGGAC TGAATCCAGG GATTCTGTGC ATGTGGAGGT
  AAGAGTCCTA CAATGGAGGG TTCACCAGCT TCGCTATTTT CTGTTTCTAA GTCTCACTCT
  CCTGTAACCT TCACGAAGGC CTGGACTCCT TCACTGGACT ATGCCTCCTG ACTGTATGCT
  Y
  AAGAGTTCTT GGGTGGTCCT CTAGCGCTTT CAAAATGTGT CAGGTGAAGA AACTGCAAAG
  GGTTCGCCTA GGAGGAAAGT GTACTGGATG CAGCAGACAG GTTGGAGAGA TAACTCAGTG
  GTTTAGGACT TTGAAGCCTT CATATGACTC CTCAGGATCC ATATGATGGA AAGTTGTCAC
  ACACAATAAA AAAAAAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058734	NES12092213	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31500904					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058734	NES12092213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77788202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1305 bp proximal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	969 bp proximal
Rr505141	regulatory region 505141	1667 bp distal
Rr505142	regulatory region 505142	517 bp distal
Rr505143	regulatory region 505143	430 bp proximal
Tssr131883	transcription start site region 131883	1552 bp upstream
Tssr131884	transcription start site region 131884	1619 bp upstream
Tssr135141	transcription start site region 135141	1380 bp downstream