rs31500906 SNP Detail

Summary

• ID
  rs31500906
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77788704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTGGGAG TACATCAATG
  GCACAAGACT CAGGGGAGTC AGATTCCTAG CTTTCAGAAT CCCTCAGATT CTGGGTGCCC
  TGGGACCAGG TGGGCAGTGA GAAGCAAGGC TGTCATACCC AGAGGTCTAG AGGCAGCTGA
  GAGGGAGTGT GCTGATGTGC CAGCATCTGT ATGTAGCAGG TGTGCCCCAC GGAGGCACAG
  M
  CAGGTTCCAG GCGCTCTTCC CTCCTTGCCA TGGATGGAGA GGGACGAGGT GCCCGATGGT
  TTGCTCTCTC AGCAGGTGTG ATGGCTTGTA GACACAGGAG GTGCACATAG CAAGCCTGAA
  GGTCATCAGC AAGCTTGCCG GTGTGCACTG TGTTCTGGGC TTCCTCTTCC TCCTCTTTAC
  TCTCCTGTGT GTGTTGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058736	NES12092214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31500906					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058736	NES12092214	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77788704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	803 bp proximal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	467 bp proximal
Rr505142	regulatory region 505142	1019 bp distal
Rr505143	regulatory region 505143	within coordinates
Tssr131883	transcription start site region 131883	1050 bp upstream
Tssr131884	transcription start site region 131884	1117 bp upstream
Tssr131885	transcription start site region 131885	1530 bp upstream
Tssr135141	transcription start site region 135141	878 bp downstream