rs31501538 SNP Detail

Summary

• ID
  rs31501538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77789106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGAAGA GGCCCGCGCG
  GGGGTGGGGG GTAGGCGGAG GAGCCGGAGA ACCAGAGACA AGCTACCTGT ATCTCCAGTA
  CTTAGGAGGT GGAAACAATC AGCGATTCAG AACTCCTACA TAGTATATCC AAGGCTGGGC
  TGCAGATACT GAGCCCCTTT CTCAAACCAA CAAAAAAGAA ACGCTACATC ACAAACGGAC
  M
  TATCTCCATC TCCTGTCCCA AGGTTTCCAG TTTGAGACTT CTTTTCTTAA AAGGAGAGAT
  TACTAATAAG AGCTGTACTT AACCTAGCCT TATTAGTCTT TCTCCTCGAC CTTATTTAGG
  AGCGGTTGAG ATATGAGAAA TAATGGAGCC CGGGTCTGGA GAGATGGCTC AGCGATTAAG
  AGCACTGGCT GCTCTTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058748	NES12092182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31501538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058748	NES12092182	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77789106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	401 bp proximal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	65 bp proximal
Rr505142	regulatory region 505142	1421 bp distal
Rr505143	regulatory region 505143	within coordinates
Rr505144	regulatory region 505144	1617 bp proximal
Rr505145	regulatory region 505145	1887 bp proximal
Tssr131883	transcription start site region 131883	648 bp upstream
Tssr131884	transcription start site region 131884	715 bp upstream
Tssr131885	transcription start site region 131885	1128 bp upstream
Tssr135141	transcription start site region 135141	476 bp downstream