rs31502166 SNP Detail

Summary

• ID
  rs31502166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77790498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGACCAT CACTCTCCCT
  GGCTCTGGCT CTTTTTGTTT TCCTTTTGAG ACAGGGTCTC ACTATGTAGC TCTGGCTGTC
  CTGTGTAGAC CAGGCTTGTC TGGAACTCCT AAGAGACCTA CATGTCTCTA CTTCCAGAGT
  GCTAGACTGG AGGCACGTGC CAACATGCTA CAGACCCTTG AAACTTGCCG CTTCTGGTTG
  Y
  ACGTGATGTT CCCTGTTTCC AGTCTGTGTA CTGCTGCCCT CCCCACAGGC TGCTATTCTC
  TTGCACGCAG CCTTGCTCAC TCATCCCTCA GTATCCTCTT CCTGACTTTT CTACCCACCA
  GCTCACCTTT CTGATCAAGC ATTTGCGTTG TAGACATACT ATGTGTCTTC CCCGGGGCCG
  GTTAGCCCCT GCTTGGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058756	NES12092078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31502166					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058756	NES12092078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77790498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	676 bp distal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	335 bp distal
Rr505143	regulatory region 505143	within coordinates
Rr505144	regulatory region 505144	225 bp proximal
Rr505145	regulatory region 505145	495 bp proximal
Rr505146	regulatory region 505146	1207 bp proximal
Tssr131883	transcription start site region 131883	702 bp downstream
Tssr131884	transcription start site region 131884	664 bp downstream
Tssr131885	transcription start site region 131885	257 bp downstream
Tssr135141	transcription start site region 135141	899 bp upstream