rs31502884 SNP Detail

Summary

• ID
  rs31502884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77790980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTGGG CCTGCTCTGT
  CTGATGTTAA GTAGGAGTTG GTGTCCGAGG GCCTCCTGCC CGGAAGGTCG TGACCAGTCA
  TCTGGGGCGG CCGAGTGCTG GGAAATGCAG CCTCTAGAGA GGAGCTGGGA GGTCAGGCTC
  CGCTGAGTGG GTAGGGAAGG TCAGCTCACT GCACAGATCC TAGCCTTCCC CAGCTGCTGC
  Y
  GGCCTGCTAC ATTCTCCGGG TCAGGCTGGC CTCTGCTTGT CCCTACAGCC CACAGAGGCT
  TAGGCAGGGA GGGCTACGCC CAGCCCTACA GAGTCCCTAC TTCCTTTGCT GAGGAGGAGG
  CTCAGGGCCT GATAACTTGT GGTCAGTGGT CGGGCCAAGT GCTGGTCTAA CACCGTGGTT
  ACTAGGCACA GTCCTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss48058764	NES12092082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs31502884					SNP	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058764	NES12092082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77790980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1158 bp distal
Gm62342	predicted gene, 62342	within coordinates
Rr243	regulatory region 243	817 bp distal
Rr505143	regulatory region 505143	388 bp distal
Rr505144	regulatory region 505144	within coordinates
Rr505145	regulatory region 505145	13 bp proximal
Rr505146	regulatory region 505146	725 bp proximal
Tssr131883	transcription start site region 131883	1184 bp downstream
Tssr131884	transcription start site region 131884	1146 bp downstream
Tssr131885	transcription start site region 131885	739 bp downstream
Tssr135141	transcription start site region 135141	1381 bp upstream