rs31502890 SNP Detail

Summary

• ID
  rs31502890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77791222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACAGCCC ACAGAGGCTT
  AGGCAGGGAG GGCTACGCCC AGCCCTACAG AGTCCCTACT TCCTTTGCTG AGGAGGAGGC
  TCAGGGCCTG ATAACTTGTG GTCAGTGGTC GGGCCAAGTG CTGGTCTAAC ACCGTGGTTA
  CTAGGCACAG TCCTCCACCT GTGACCACCT TCCAGTTAGT TCTGGGCTGT GTGGCGTTCT
  M
  TCAGGTCAGG CCAATGCAGC ACTGAATGGA CAGTCATGGC TGAGTCCTTG GGCTGGACGT
  GGCAGTGGAA AGGACTGGTC CTCATGATGG CGAGCCAGTC CTAACCACTA AGGGAACTCC
  AGTACCCTCG TCTGGCTTTT TTGAGACCTG GCTCATTTGA GCCTGAGCTC GTCTGAAACT
  TGTGGTAATC CTTTCCTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058772	NES12092086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31502890					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058772	NES12092086	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77791222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1400 bp distal
Gm62342	predicted gene, 62342	219 bp upstream
Rr243	regulatory region 243	1059 bp distal
Rr505143	regulatory region 505143	630 bp distal
Rr505144	regulatory region 505144	230 bp distal
Rr505145	regulatory region 505145	129 bp distal
Rr505146	regulatory region 505146	483 bp proximal
Tssr131883	transcription start site region 131883	1426 bp downstream
Tssr131884	transcription start site region 131884	1388 bp downstream
Tssr131885	transcription start site region 131885	981 bp downstream
Tssr135141	transcription start site region 135141	1623 bp upstream