rs31503505 SNP Detail

Summary

• ID
  rs31503505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115737432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCAGCC TGCCTCAGCC
  TGCCTCAGCC TGCCTCAGCC TGCCTCAGCC TGTTTCAGCC TGCCTCTGCC TGCCTCAGCC
  TGCCTCTGCC TGCCTCAGCC TGCCTCTGCC TGCCTCAGCC TGCCTCAGTC TGCCCTGCTG
  TTCCACACTC CACACGTTAT TTTCTGGTGC AAATTTCCTC ATTAAGCACG TGCTCTAGGA
  W
  CTGGGACAGG GACCAATGTG TAGAAGGCAT TCAGTCAATT TTGCTGCATG AGAAAGCGAT
  CAGAAAGGTT AGCCTGATGT GTGCGTGTCT GGTGGTGGGG AGGGTGGAGG GCACACTCCA
  GACATCACTC CATATGGTAT GAGAACAAAC AAACAAACAA ACAAACAACC TTATTTATTC
  TCATAATGTA CTCACTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058255	NES11879172	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31503505					SNP	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058255	NES11879172	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115737432 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr1971	transcription start site region 1971	739 bp downstream
Tssr58324	transcription start site region 58324	1783 bp upstream
Tssr62529	transcription start site region 62529	1471 bp upstream
Tssr62530	transcription start site region 62530	1451 bp upstream
Tssr62531	transcription start site region 62531	1435 bp upstream
Tssr62532	transcription start site region 62532	1851 bp downstream
Tssr62533	transcription start site region 62533	1875 bp downstream