rs31503509 SNP Detail

Summary

• ID
  rs31503509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115737763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGGTAT GAGAACAAAC
  AAACAAACAA ACAAACAACC TTATTTATTC TCATAATGTA CTCACTTCAG ATGAGCAAGA
  GACAAAATCA CCTGGAAACC CCTTAGAAAC TGCTAAACCC CCGGGGCCCT TCCTAGCCAC
  ATGCAATCAC AAGTTGTCCC CAGGCTATCC TAGCACATCT GCGCTGACAC ATGCTCATGT
  Y
  AGAGCCCCAC CAGTCTGAAT GTTTTCTGCC ATCTTGAAGG CTTAAATGAC TGGCACACAG
  GAAGTGCCTT CTCAAAGGAA TCGTCTAACT TTGGTTTCCC TTCTTCTGAT TCTGTCATGA
  GGCACTTCCC CCCACCCCCA CCCCGTGCCT CAGTTTCCCT CTCTGCCTCT CCTGAAGCAC
  CTGCTTGGAT ATTTACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058259	NES11879151	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31503509					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058259	NES11879151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115737763 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr1971	transcription start site region 1971	1070 bp downstream
Tssr58324	transcription start site region 58324	1452 bp upstream
Tssr62529	transcription start site region 62529	1802 bp upstream
Tssr62530	transcription start site region 62530	1782 bp upstream
Tssr62531	transcription start site region 62531	1766 bp upstream
Tssr62532	transcription start site region 62532	1520 bp downstream
Tssr62533	transcription start site region 62533	1544 bp downstream