rs31503664 SNP Detail

Summary

• ID
  rs31503664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77791397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTCTGG GCTGTGTGGC
  GTTCTCTCAG GTCAGGCCAA TGCAGCACTG AATGGACAGT CATGGCTGAG TCCTTGGGCT
  GGACGTGGCA GTGGAAAGGA CTGGTCCTCA TGATGGCGAG CCAGTCCTAA CCACTAAGGG
  AACTCCAGTA CCCTCGTCTG GCTTTTTTGA GACCTGGCTC ATTTGAGCCT GAGCTCGTCT
  S
  AAACTTGTGG TAATCCTTTC CTTCAACATC GCTGACCAGG TCAATGAAGA ACAACCCTAG
  AGTTTGAGGA AGGAGCTCAG ATGCCACATC CCGGCATCTC CCTCTAGTTT GGATAAACCA
  GGCAAGGCTG CCACTTCTCT GGGTTTCCAA TCTCTCTCCT GGTCAAATCC TTGGGGTTTC
  CTTCCCCAGC ACAATGCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058776	NES12092088	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31503664					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058776	NES12092088	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77791397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1575 bp distal
Gm62342	predicted gene, 62342	394 bp upstream
Rr243	regulatory region 243	1234 bp distal
Rr505143	regulatory region 505143	805 bp distal
Rr505144	regulatory region 505144	405 bp distal
Rr505145	regulatory region 505145	304 bp distal
Rr505146	regulatory region 505146	308 bp proximal
Tssr131883	transcription start site region 131883	1601 bp downstream
Tssr131884	transcription start site region 131884	1563 bp downstream
Tssr131885	transcription start site region 131885	1156 bp downstream
Tssr135141	transcription start site region 135141	1798 bp upstream