rs31503666 SNP Detail

Summary

• ID
  rs31503666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77791526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTAAGG GAACTCCAGT
  ACCCTCGTCT GGCTTTTTTG AGACCTGGCT CATTTGAGCC TGAGCTCGTC TGAAACTTGT
  GGTAATCCTT TCCTTCAACA TCGCTGACCA GGTCAATGAA GAACAACCCT AGAGTTTGAG
  GAAGGAGCTC AGATGCCACA TCCCGGCATC TCCCTCTAGT TTGGATAAAC CAGGCAAGGC
  Y
  GCCACTTCTC TGGGTTTCCA ATCTCTCTCC TGGTCAAATC CTTGGGGTTT CCTTCCCCAG
  CACAATGCCT CAGGGGTCCA GGGAGATATA TCACCTGGAT TGATCCCTGT GTCCCCTCAA
  TGCCTGGCCC TGGGCAGAGA AGGGACATGA TATGACAGGT GCTTAGGGTA CAGGTGCAAG
  CAGTCTACTC AATGAGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058778	NES12092089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31503666					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058778	NES12092089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77791526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1704 bp distal
Gm62342	predicted gene, 62342	523 bp upstream
Rr243	regulatory region 243	1363 bp distal
Rr505143	regulatory region 505143	934 bp distal
Rr505144	regulatory region 505144	534 bp distal
Rr505145	regulatory region 505145	433 bp distal
Rr505146	regulatory region 505146	179 bp proximal
Tssr131883	transcription start site region 131883	1730 bp downstream
Tssr131884	transcription start site region 131884	1692 bp downstream
Tssr131885	transcription start site region 131885	1285 bp downstream
Tssr135141	transcription start site region 135141	1927 bp upstream