rs31503668 SNP Detail

Summary

• ID
  rs31503668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77791616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCAACA TCGCTGACCA
  GGTCAATGAA GAACAACCCT AGAGTTTGAG GAAGGAGCTC AGATGCCACA TCCCGGCATC
  TCCCTCTAGT TTGGATAAAC CAGGCAAGGC TGCCACTTCT CTGGGTTTCC AATCTCTCTC
  CTGGTCAAAT CCTTGGGGTT TCCTTCCCCA GCACAATGCC TCAGGGGTCC AGGGAGATAT
  R
  TCACCTGGAT TGATCCCTGT GTCCCCTCAA TGCCTGGCCC TGGGCAGAGA AGGGACATGA
  TATGACAGGT GCTTAGGGTA CAGGTGCAAG CAGTCTACTC AATGAGGCTG GTGGCCTAGG
  GACTGACCTG GCACTGGTAC AGTCCAAGGT GTCCAGGGTC AGTATCATTG ACATCTTGAA
  AATGAACCTT CTGAGCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss48058780	NES12092090	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs31503668					SNP	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058780	NES12092090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77791616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1794 bp distal
Gm62342	predicted gene, 62342	613 bp upstream
Rr243	regulatory region 243	1453 bp distal
Rr505143	regulatory region 505143	1024 bp distal
Rr505144	regulatory region 505144	624 bp distal
Rr505145	regulatory region 505145	523 bp distal
Rr505146	regulatory region 505146	89 bp proximal
Tssr131883	transcription start site region 131883	1820 bp downstream
Tssr131884	transcription start site region 131884	1782 bp downstream
Tssr131885	transcription start site region 131885	1375 bp downstream