rs31504139 SNP Detail

Summary

• ID
  rs31504139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115737924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTATCCT AGCACATCTG
  CGCTGACACA TGCTCATGTC AGAGCCCCAC CAGTCTGAAT GTTTTCTGCC ATCTTGAAGG
  CTTAAATGAC TGGCACACAG GAAGTGCCTT CTCAAAGGAA TCGTCTAACT TTGGTTTCCC
  TTCTTCTGAT TCTGTCATGA GGCACTTCCC CCCACCCCCA CCCCGTGCCT CAGTTTCCCT
  Y
  TCTGCCTCTC CTGAAGCACC TGCTTGGATA TTTACCTGGA GCCTGACAGC AGTACCTCCG
  AGTGGGCAGA TGTCATAGTC AGGGTGGACC TGTCTGAGGT GTCAAGGAGC CCCCCCCCCA
  CCTTAGCTCC ACCCAGGTGA TGTCAGTGCC CAGTGTGTGG GTGACTCACA GCCTCCCACC
  AGGATGGAGC ACAGCTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058269	NES11879156	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31504139					SNP	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058269	NES11879156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115737924 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr1971	transcription start site region 1971	1231 bp downstream
Tssr58324	transcription start site region 58324	1291 bp upstream
Tssr62529	transcription start site region 62529	1963 bp upstream
Tssr62530	transcription start site region 62530	1943 bp upstream
Tssr62531	transcription start site region 62531	1927 bp upstream
Tssr62532	transcription start site region 62532	1359 bp downstream
Tssr62533	transcription start site region 62533	1383 bp downstream