rs31504213 SNP Detail

Summary

• ID
  rs31504213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190803258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GTTCAGGAGC TAAAAAGGGT
  W
  AAACCTGGAG GCCAGCACTT TTGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45040241	mCV23579851	ABI	CRAMUS_MOUSE	f	SNP	A	A					T
ss51423882	NES14444283	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	T	A	T	A	T	T	A
ss146501481	ENSMUSSNP5041147	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31504213					SNP	A	A	A	A	A	A	T	A	T	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51423882	NES14444283	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190803258 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426040	regulatory region 426040	495 bp proximal
Rr426041	regulatory region 426041	1307 bp proximal
Tssr10723	transcription start site region 10723	1862 bp downstream