rs31504644 SNP Detail

Summary

• ID
  rs31504644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGTTAATAC ACATATCTGT ACATACCTGT ATGTACTATA CGAACTTTCT TTTTTAATAA
  AGGTACTTTA GGGAGCTTTG GAGGTAAGGG TCTTCGCAGA AGTAGTGGAT GCTGCTGGGT
  TTTGAGTGAG CGATAAATGC TCTTTTTCAT AGCTGCTGGT TAAGTGAGAA CTGAACTTCC
  TGAGAACGAA TCGTTACTGA AAAGAAGTGG TTATCACTTA GAAAATATCC TTACGGAAAC
  CATTCTGAGT TGCTATGATA CTGAGTTTAA GCAGGCTAGC ATTGTAAGGA GGGGGGGGGG
  R
  GAAAGAGTAA AAAAAATCAT TTAAAATTTA TTTTTGAAGT ACTTTTAAAA TGGCATATTT
  TTAATACAGG CTTAAGCATG GAGCTTAAGA AAGACAGAGA GGCATTCAAA AAGTTTAACG
  TTTTCTTTCT GTACTGGATA TTGAAACTCT GGTCTCATGC AAGGCCATAT CACTGAGCCA
  AATCCCCCTG CTTTCCAATT TGCTTAAAAT TAGAAGTTGG GAAATACATT TGTAAGCCCA
  ACACTTGAAA GCCTGAGACA GGAGGGTCAG CCTGGGCTAC ACGGGGAAGG GTGGTTTCTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39296484	mCV24265495	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31504644					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	782 bp proximal
Cpgi6737	CpG island 6737	1355 bp proximal
Gm62951	predicted gene, 62951	631 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1391 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	221 bp proximal
Tssr4477	transcription start site region 4477	888 bp downstream
Tssr126606	transcription start site region 126606	1368 bp upstream
Tssr126607	transcription start site region 126607	1487 bp upstream
Tssr126608	transcription start site region 126608	1534 bp upstream
Tssr126609	transcription start site region 126609	1793 bp upstream
Tssr126610	transcription start site region 126610	1845 bp upstream
Tssr129761	transcription start site region 129761	847 bp downstream
Tssr129762	transcription start site region 129762	869 bp downstream
Tssr129763	transcription start site region 129763	905 bp downstream
Tssr129764	transcription start site region 129764	1169 bp downstream
Tssr129765	transcription start site region 129765	1266 bp downstream
Tssr129766	transcription start site region 129766	1836 bp downstream
Tssr129767	transcription start site region 129767	1878 bp downstream