rs31505323 SNP Detail

Summary

• ID
  rs31505323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169356456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGCCATC TATTTCAGTG
  TAAATGTTGG GGAAAGCAAA ATATCCTACC CTGAGTATTG TTGCTTCCTG TGTTTCAAGA
  AACCACAGAC CTCTGTAGAC GCAGGAAAGG CTCAACAAGG TCCTCCTGTC AAAAGACATG
  TATAGATATT TACATTAGAA AAGAGAAAAA GCAGTCAGAG GTTTCTCTAT GGGAAAGTTT
  Y
  CTCTCTGCAT AGAGAGATCT CAGCCTGAAA ACAAGACAAT TTACAGCCGG GCGTGGTGGC
  ACACGCCTTT AATCCCAGCA CTCGGGAGGC AGAGGCAGGC GGATTTCTGA GTTCGAGGCC
  AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAGA AACCCTGTCT
  GGAAAAACCA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49745921	NES13045257	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31505323					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49745921	NES13045257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169356456 () rs orientation: forward

Symbol	Name	Function Class
Nuf2	NUF2, NDC80 kinetochore complex component	Intron
Rr422957	regulatory region 422957	1922 bp proximal