rs31505749 SNP Detail

Summary

• ID
  rs31505749
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115739141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTAGG ACTGAAACCT
  GAGTTTTCCC CCTCCCCCTT CCCCTCCTCC TTCCTCCTCC CCCTTCCTCT ACTCCTTCCT
  CCTCCCTCTT CTTCCTCCTC CTTCCTCCTC CCCCTTCCTC CTTCTCTCTC TGCTCCTCCC
  CCTTCTCTCC CTCCTCTGTT CTCTTCCTCC TCCTTTCTTT GGTGTTGGGA ACCAAACCGA
  S
  GGCCTTGTTC AAGCCCCCAC CACTGAACCA CGCCCCCAGC CATTGATCTC CTTTCCGTGA
  CGGCTAACCC TGCTGGATAT CACTCCACAC ACCTCCTTTC CTTTCTCTTG GTGAGATGTC
  AGTCCATGCC TCTGGCCTGC TTTCTGCTTG CTCTTGCCCT CGCTGCAGAG TTGATAGGAG
  GAGTCAGATC CTCTGTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48058289	NES11879111	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31505749					SNP	C	C	G	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058289	NES11879111	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115739141 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr58324	transcription start site region 58324	74 bp upstream
Tssr62532	transcription start site region 62532	142 bp downstream
Tssr62533	transcription start site region 62533	166 bp downstream