rs31505751 SNP Detail

Summary

• ID
  rs31505751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115739219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCTC TTCTTCCTCC
  TCCTTCCTCC TCCCCCTTCC TCCTTCTCTC TCTGCTCCTC CCCCTTCTCT CCCTCCTCTG
  TTCTCTTCCT CCTCCTTTCT TTGGTGTTGG GAACCAAACC GACGGCCTTG TTCAAGCCCC
  CACCACTGAA CCACGCCCCC AGCCATTGAT CTCCTTTCCG TGACGGCTAA CCCTGCTGGA
  Y
  ATCACTCCAC ACACCTCCTT TCCTTTCTCT TGGTGAGATG TCAGTCCATG CCTCTGGCCT
  GCTTTCTGCT TGCTCTTGCC CTCGCTGCAG AGTTGATAGG AGGAGTCAGA TCCTCTGTCA
  GCTCGTGGTG GGCAGATAGT TTCTGTGTCC ACCGGCCACT CTCTGAAAGT GCTGAATAGC
  CATTCCCTTG TCTATTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48058291	NES11879114	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31505751					SNP	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48058291	NES11879114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115739219 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr58324	transcription start site region 58324	within coordinates
Tssr62532	transcription start site region 62532	64 bp downstream
Tssr62533	transcription start site region 62533	88 bp downstream