rs31508004 SNP Detail

Summary

• ID
  rs31508004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAAATG GAGACATAAC
  TGTAAAATCC TATTGCAGGG CAGGTACAGA TGCCACGGTC AGACTGTCAT CTTAGCATGT
  AACCCTGTGT TTGATGCCCC GCAGAAAACA AACGCTACAA ACAAATGAAC ACACCTGTCT
  GTCCTAGGGC AGGCACCCAA AATATGGGCG CTGTCATTTC TGAAGCCGGA CACCCAGATG
  Y
  ATACTGCTGC AAGCATGCTG CCCAGAGGTG GTGCTGTTTT AGGTTCTAAA GCTAAAAGCT
  GTACCATGTG TCCCTCTCTA CAAAGTCTGT GCTTCGGCCC TGCCCTGGTA AAATAACAAG
  CAACTAACAG ATGTCAAAGC AATGAATGAT TTGGGCTAGG TAGGGTGGCT CACACTTTTA
  ATATCAGCAT TCAAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46039379	mCV22749681	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss47255819	NES11555290	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	C	T	T	T	C	T	T	C	T
ss145875058	ENSMUSSNP4924040	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31508004					SNP	T	C	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255819	NES11555290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220107 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	764 bp upstream
Rr655535	regulatory region 655535	1076 bp distal
Rr655536	regulatory region 655536	525 bp proximal
Rr655537	regulatory region 655537	958 bp proximal
Rr655538	regulatory region 655538	1452 bp proximal
Tssr69045	transcription start site region 69045	1969 bp upstream