rs31508828 SNP Detail

Summary

• ID
  rs31508828
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60438915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TCCAAATATT TTTTTAGTTA
  S
  CGTTCACTTG TGGTCAGAGA ACAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45541591	mCV22695805	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss135219428	ENSMUSSNP1109248	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss320786577	CHEV_3_60335416	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31508828					SNP	G	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60438915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577419	regulatory region 577419			390 bp proximal
Tssr29302	transcription start site region 29302			1913 bp downstream
Tssr29303	transcription start site region 29303			1755 bp downstream
Tssr29304	transcription start site region 29304			1415 bp downstream
Tssr29305	transcription start site region 29305			1169 bp downstream
Tssr29306	transcription start site region 29306			242 bp downstream