rs31509090 SNP Detail

Summary

• ID
  rs31509090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77838945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCATTAG TGGTAAGCCA
  CAGCTTGTTG ATCAAGGTCT TCAGAGCAGA GCCTCAGATC TGTGCCTGCT AAATGAGTGT
  TAGGGAGCAT GTTCTCTAGG TTTCTTGTGA CGACTGGACA AGTTTGAGGT GCCCACATAA
  TGTCTCCTAA ACCAAAGCAA GGTGACATCT GTATCTGGAA GCCATGCTTG TTTGGCCTTT
  Y
  GATCTGGTTT TGTTCTGAAA TCCTACTGGC TAGTGTCTAA CGTTGCCCGG ACACTTCACT
  CTGCTTGTCT CAGCATGGGT TTTAGGGACA CTTATTTTAG AAAACTATCA GATGTGTCCA
  ACCCGTGGCC TCTGGGCCAC ATGGGATCCA GGATAGCTAT GATTATGGCC CAGTATAACT
  TGCAAACTTA CTTAAAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48059182	NES12090388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31509090					SNP	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059182	NES12090388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77838945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7278	CpG island 7278	828 bp proximal
Foxred2	FAD-dependent oxidoreductase domain containing 2	within coordinates
Rr505175	regulatory region 505175	1920 bp proximal
Tssr135154	transcription start site region 135154	1703 bp downstream
Tssr135155	transcription start site region 135155	1913 bp downstream