rs31509291 SNP Detail

Summary

• ID
  rs31509291
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102125369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCGCATC CATTTTTCAG
  CTCTGCATGC TGTGTGCCGT TTTGAAGCAT CCTGTTTTAA AAAAAAATTA TTTGGCTTTG
  AGAAACTTTT AGTCAGTTCA TGGAAGACGT GTGATTCCAT ACAATTCCAC ATTTACTCAG
  CTTAGGATGA CTGGAGAAGG TATATGCAAA GCTTGCCCCT GGCTTGAAAG AGTCCATTAG
  W
  ACATTCTGAT GTGACATTGG ACAAAAATAT ATTCTAATTG TGTCTGCGGG TTTTTATCAT
  CATGTTTACC ACTTTTGTGG CAGTCTTGCT GTGGTTTGAT TTTATGTGTT TATCATATTT
  TGCAGTCTCT TTTTTTTTAA TTGAGCTAAA TATTTTCTGA AAACTATGTG ATTGCAGATT
  TCATTTAAGT CGATTTTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39297327	mCV22290633	ABI	CRAMUS_MOUSE	f	SNP	T	A					A
ss49352257	NES12571126	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A		T	A	A	A	T	A	T	T	T
ss146740364	ENSMUSSNP5432667	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31509291					SNP	T	A	A	A	A	A	A	T	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49352257	NES12571126	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102125369 () rs orientation: forward

Symbol	Name	Function Class
Gm52170	predicted gene, 52170	495 bp upstream
Lmo7	LIM domain only 7	within coordinates
Tssr126931	transcription start site region 126931	1037 bp downstream
Tssr126932	transcription start site region 126932	453 bp downstream