rs31509968 SNP Detail

Summary

• ID
  rs31509968
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77841262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAGCA GGTCCATGAT
  GGGACGCCTG GCCCTTCCTT TTGATTTGTA CTAATCCTTG TGCCAGAAGA TGAGAGATTT
  TTGGAGAAAA CCTTGCCATT TATATCCCTT TATTACTGTA GAAGACTGAA CCTAATTGGC
  CAGTCAATTT TGTGGGACTG AGGAGAGGCC AAGACAGATG AACCAATTAT TGTCTTAGAG
  W
  CTTGATCGTT CAGTTGTACG AAGGGTGGCC AAGGGAAGCG ATTCCCAGCA CTTTGTAACT
  GACTCGTCAA TACAAAGTGA CAAGGTTTGC ATAAAACAAA GATAAAGCTA AGTGGGTTTT
  GAGACAGCAT AGTGGCTCAC TCTTGTATGT CCAGCAATCG TGAGACTGAG ACAAGAGGAC
  TGTGTGAAAT CCTGCTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48059190	NES12090373	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31509968					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059190	NES12090373	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77841262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7278	CpG island 7278	113 bp distal
Eif3d	eukaryotic translation initiation factor 3, subunit D	1939 bp downstream
Foxred2	FAD-dependent oxidoreductase domain containing 2	340 bp upstream
Rr505175	regulatory region 505175	within coordinates
Tssr131888	transcription start site region 131888	254 bp downstream
Tssr135154	transcription start site region 135154	593 bp upstream
Tssr135155	transcription start site region 135155	339 bp upstream