rs31511717 SNP Detail

Summary

• ID
  rs31511717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77842611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGAATG CCCAGGCAGG
  CAGGCCAATT ACTGAAGTGT TCAGCAGAGC ACTCAGTCCA CAGCCTTTAA ACACATGTTC
  TTACGTGACA CGTTGCTTTG TGCAGACTGG CTTGAGATGT TCTCCAGCCC TTGTAAGCTA
  CCCAACAGAC ACTCTGAAGA TGTCTTCCTC AAGGGCCACC TCCCAACCAC ACCCTGTCCT
  Y
  GGAGAGAGTT TCAAAGGCAC ACCTAGGTCG CTAGGGACAG ACAGCACAGT TCATCCTTCC
  TCAGGCTGGG ACACTTCATA TTGTGTGACC CCCAACCATG AACTTATTTT CATTGCTACT
  TTTTTTTTTT TTTTTTTTTG GTTTTGGTTT TTTGAGACAG GGTTTCTGTG TAGCCTTGGC
  TGTCCTGGAA CTCACTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48059210	NES12090297	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31511717					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48059210	NES12090297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77842611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7278	CpG island 7278	1462 bp distal
Eif3d	eukaryotic translation initiation factor 3, subunit D	590 bp downstream
Foxred2	FAD-dependent oxidoreductase domain containing 2	1689 bp upstream
Rr505175	regulatory region 505175	1199 bp distal
Tssr131888	transcription start site region 131888	1603 bp downstream
Tssr135154	transcription start site region 135154	1942 bp upstream
Tssr135155	transcription start site region 135155	1688 bp upstream