rs31512072 SNP Detail

Summary

• ID
  rs31512072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107011371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACTTATGCTT CTGTGTTTCC TGGGGCCGTT ATCAGCACCG AGTTCCCTGC
  Y
  GCAGGCAGCT GGAAGGCATT AAAGTAAAGC ACACTTCTCA GCCCCAATTA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45541230	mCV23092542	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss135581523	ENSMUSSNP6687863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320863869	CHEV_3_106906973	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31512072					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107011371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13670	CpG island 13670	1185 bp distal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	within coordinates
Rr77034	regulatory region 77034	370 bp distal
Tssr31165	transcription start site region 31165	1454 bp downstream