rs31512104 SNP Detail

Summary

• ID
  rs31512104
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169313864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTATGC ATATATTTGT
  GTGTGCATAT GTATTGAGAT ATGTATATAT ATCATAAGAT ATATATGTGT ACGTATATAT
  CATAAGGAAA ATAATAAAAC TCAAAACTCA GATACATGGA TATTTAAGGA GATTGTGGAG
  ACCTAAGTGC ATTCGACTTT TTGTCCCGTG ACAGATAGTT GGGAGAAATA ATTTAAAAGG
  S
  AGAAAGATCT ATTCTGGCTC CAGTTTCAGT CCACCATGAT CAGTGGCTGG GTAGCTTTTT
  CTATGGGAAA GCAGCAGGCA TACATTCTGC AGGATACTGG TTTGAAGGCT GACCCCTGCT
  GTGACAGTAC TCATCAAGAT GCATTGCCCA GCAGAAACTA GCACCTTCCA CTGACTACTT
  CTACTAAGCT CAGAGCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49746193	NES13046248	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31512104					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49746193	NES13046248	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169313864 () rs orientation: forward

Symbol	Name	Function Class
Gm53643	predicted gene, 53643	447 bp upstream
Gm71126	predicted gene, 71126	625 bp downstream
Rr422941	regulatory region 422941	529 bp distal
Rr422942	regulatory region 422942	326 bp distal