rs31513007 SNP Detail

Summary

• ID
  rs31513007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48952425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAACAT CTACACAGAG
  ACTTTGATTG CCAGCCTTCC TCCCCAATAC CATGGGCCTC TAAATTAAAA CATAAAACAG
  CAATAGACAG CCTCTGTTTT GCTGTCTTGG CCACTAAGAG TGGCCAAGCT TCAGATCTGG
  AAAATAAAGA TATTTTAAGA TTTGGCTTCT GACTATATGT CTATTTTAAT ACAAAACATG
  Y
  ATTTCCAAAT ATCATGTGTG CTGTGCTGCC CCCCTCTAGG GTATATTCCT ACCCCTGAGC
  TGCAGAGACC TGTGTAACTT CCACTCCAGG CCACGTACTG TGGCAAAGCA CTAAGTGCAG
  AACAGAAACT GTAGGAGAAC AAGCTAGTGA GGGTTGGGAC TTAGCTGTTA GCAGAGTTAG
  CAATGAGCCT AGGAGTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46040328	mCV23858871	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31513007					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48952425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1507 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr161370	regulatory region 161370	1425 bp distal
Rr167850	regulatory region 167850	975 bp proximal
Tssr66792	transcription start site region 66792	1144 bp upstream
Tssr66793	transcription start site region 66793	1403 bp upstream
Tssr66794	transcription start site region 66794	1574 bp upstream
Tssr66795	transcription start site region 66795	1604 bp upstream