rs31513036 SNP Detail

Summary

• ID
  rs31513036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:169311681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TGTTTCTCCT TCCTTAAGAA
  R
  GTTCTGCCAT GAGCTGGTGA GATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45041574	mCV24848501	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss49746205	NES13046312	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	G		G	A	G	G		G	G	A		G
ss146098937	ENSMUSSNP6922739	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320101996	CHEV_1_171414243	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31513036					SNP	G	G	G	A	A	G	G	A	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49746205	NES13046312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169311681 () rs orientation: forward

Symbol	Name	Function Class
Gm53643	predicted gene, 53643	within coordinates
Gm71126	predicted gene, 71126	within coordinates
Rr422941	regulatory region 422941	1154 bp proximal
Rr422942	regulatory region 422942	1726 bp proximal