rs31513104 SNP Detail

Summary

• ID
  rs31513104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169358808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCATCCAT GTGGAGACAG
  GGTGGGGAGG GGAGGAGTTT GGGATGTGGA TCAGTCGGAG GGTGGATGGG GAGGGGCGGG
  GAATGGAATA TGAAGTGTAA AAAAATTGAA TTACAAATAA AGTTAAATAA ATAAATAAAA
  AAAGGCTAGT CTCAGGAATA TAGGGGTTCG AGACCAACCT GGGATAGATG AGCCTGTCAA
  R
  TCAACACACA AGTTAGTAAA CCCAGATGCC CCGATCCTTG GCCTTGCACC CGGCCCTCCA
  ACGCTCACCC GCTCAAACTC ACCTGGAGGC CTAGCAGCTC ACGGAAAAAC AGTTAAAAAC
  CGAGCGTCCA ACCGAAAGCC GCTGACCGTT GTCATTTTTC AAACCGGCCG CCTTTTTTTG
  TGAGGCCGGC CCCTTTCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49745904	NES13045158	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31513104					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49745904	NES13045158	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169358808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi989	CpG island 989	within coordinates
Gm34624	predicted gene, 34624	408 bp upstream
Nuf2	NUF2, NDC80 kinetochore complex component	Intron
Rr396525	regulatory region 396525	74 bp upstream
Rr422957	regulatory region 422957	within coordinates
Rr422958	regulatory region 422958	162 bp proximal
Rr422959	regulatory region 422959	447 bp proximal
Rr422960	regulatory region 422960	1080 bp proximal
Tssr14891	transcription start site region 14891	104 bp downstream
Tssr14892	transcription start site region 14892	208 bp downstream