rs31513106 SNP Detail

Summary

• ID
  rs31513106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169358768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGAGGC CCCAGGGAGT
  TTAGAGATCA GGTGGGGTGG GGGCATCCAT GTGGAGACAG GGTGGGGAGG GGAGGAGTTT
  GGGATGTGGA TCAGTCGGAG GGTGGATGGG GAGGGGCGGG GAATGGAATA TGAAGTGTAA
  AAAAATTGAA TTACAAATAA AGTTAAATAA ATAAATAAAA AAAGGCTAGT CTCAGGAATA
  W
  AGGGGTTCGA GACCAACCTG GGATAGATGA GCCTGTCAAA TCAACACACA AGTTAGTAAA
  CCCAGATGCC CCGATCCTTG GCCTTGCACC CGGCCCTCCA ACGCTCACCC GCTCAAACTC
  ACCTGGAGGC CTAGCAGCTC ACGGAAAAAC AGTTAAAAAC CGAGCGTCCA ACCGAAAGCC
  GCTGACCGTT GTCATTTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49745906	NES13045156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31513106					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49745906	NES13045156	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169358768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi989	CpG island 989	within coordinates
Gm34624	predicted gene, 34624	448 bp upstream
Nuf2	NUF2, NDC80 kinetochore complex component	Intron
Rr396525	regulatory region 396525	114 bp upstream
Rr422957	regulatory region 422957	within coordinates
Rr422958	regulatory region 422958	202 bp proximal
Rr422959	regulatory region 422959	487 bp proximal
Rr422960	regulatory region 422960	1120 bp proximal
Tssr14891	transcription start site region 14891	144 bp downstream
Tssr14892	transcription start site region 14892	248 bp downstream