rs31513659 SNP Detail

Summary

• ID
  rs31513659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127311556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCGTGCG AGGGTCTCTA
  ACGGTAAGGT GAGGAACAGT CTCACTTCTG ATCAGTGTGA CAGAGAAATT AGAAGGCATT
  TAAGATAACT AGACCAGGGG GTGCGTGCCT TAGGTGGACC CTAATCTAAA CAAGGCTTCC
  CTGGCCTCTC TTTGTCTTCC CCAAAAAGGA AGTCCTGCCT GCATTCTTCT CCTGCCAGCC
  Y
  TGCACCTTTC CTCTCAGGTT TCCCAGCTTT TCCCTCCAAA GCAGCCAATA AACAGGCTCT
  ACCTCAGGTC TGAGCCTGAG TCTCCTCCCA ACAGGACACA GAACTGCCTT AAAGGCCCAA
  GTTCCCATTC ACTGTGCCAA CACCTGCCTC CCAATTCTGG CCCCTTCCCA GTCTAAGCTC
  ACAAGCCGGT TACTGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46040730	mCV24290435	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145882063	ENSMUSSNP543738	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31513659					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127311556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19761	CpG island 19761	679 bp proximal
Ctf1	cardiotrophin 1	352 bp upstream
Rr655878	regulatory region 655878	633 bp distal
Rr655879	regulatory region 655879	within coordinates
Rr655880	regulatory region 655880	571 bp proximal
Tssr69270	transcription start site region 69270	325 bp upstream