rs31514779 SNP Detail

Summary

• ID
  rs31514779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG CCTGATTGGC TGTTCGCTTG
  Y
  CACGTTTCCT GGTTGAATTC AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46040351	mCV24696604	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss61043689	NES16084969	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T		C	T	C		C
ss145571454	ENSMUSSNP4865725	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322357791	CHEV_7_109835903	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31514779					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61043689	NES16084969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	within coordinates
Gm45527	predicted gene 45527	1170 bp upstream
Rr652623	regulatory region 652623	130 bp distal
Rr652624	regulatory region 652624	within coordinates
Trim68	tripartite motif-containing 68	62 bp upstream
Tssr73953	transcription start site region 73953	91 bp upstream