rs31514781 SNP Detail

Summary

• ID
  rs31514781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44149390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG CTCAGGCGGA GATAGAGATT
  Y
  GAGGTGCAAC CGGAAGGTAT CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46040353	mCV25287243	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T	C
ss51891398	NES14911131	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T		C	T		C	C	C	C		T
ss149113553	ENSMUSSNP2105766	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss322199067	CHEV_7_51755336	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31514781					SNP	C	C	T	T	T	T	T	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891398	NES14911131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44149390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	73 bp proximal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	1723 bp upstream
Mybpc2	myosin binding protein C, fast-type	1733 bp downstream
Rr380742	regulatory region 380742	1891 bp downstream
Rr646111	regulatory region 646111	1607 bp proximal
Rr646112	regulatory region 646112	1734 bp proximal
Rr646113	regulatory region 646113	1942 bp proximal