rs31516106 SNP Detail

Summary

• ID
  rs31516106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19305879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTGCTG AAAAAACAAC
  AACAAGGATT TGAGAAAAGT CAGGAAGAAT ATGTCCTAGT GTCCTAGATG GCAAGGACAG
  CTAAAATTAC CCTCTTCCCG GTCATCCTGA CCTCAGTTTC TGACCCAGAG ATTACAGTCT
  AAACCCATAC ATCCCAATAC CTGGCTAAGC AGTCTGTTAG CCTGAAGCAG GTAAGGATAC
  Y
  TTTGGTCACA GGGCAACCGT TGGTGCCTCA GGGAGAGTGG AGTGAGGCAT GGGGAAATGG
  AGACTGCAGG CCAGACTTTG AAGGGAAGCT AGCCAGTTCT GGTGTGGTGA AAGTGGCTCT
  GGCAGGCCTT GCGCCCTATT CCCTCCGCCT TGAGAAAAAG TGTTTGATTA CATTCCTAAA
  GCTAGCCACC AAGGTCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46040459	mCV25052805	ABI	CRAMUS_MOUSE	f	SNP		C	T				T	T
ss48163408	NES11822118	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31516106					SNP	C	C	T	T	T	C	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163408	NES11822118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19305879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	1029 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	278 bp upstream
Rr643192	regulatory region 643192	886 bp distal
Rr643193	regulatory region 643193	582 bp proximal
Rr643194	regulatory region 643194	1004 bp proximal
Rr643195	regulatory region 643195	1683 bp proximal
Tssr70933	transcription start site region 70933	1403 bp downstream
Tssr70934	transcription start site region 70934	1418 bp downstream
Tssr70935	transcription start site region 70935	1425 bp downstream
Tssr70936	transcription start site region 70936	1839 bp downstream