rs31517578 SNP Detail

Summary

• ID
  rs31517578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT AGGACACAGA GCTAGAGGCA
  R
  AACTAATGCC AGGCCCGTTT TTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46040380	mCV24185496	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss145517523	ENSMUSSNP3896053	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31517578					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	528 bp proximal
Rr400465	regulatory region 400465	848 bp upstream
Rr652012	regulatory region 652012	909 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	1079 bp upstream
Tssr68078	transcription start site region 68078	1143 bp upstream
Tssr73711	transcription start site region 73711	320 bp downstream
Tssr73712	transcription start site region 73712	892 bp downstream
Tssr73713	transcription start site region 73713	930 bp downstream
Tssr73714	transcription start site region 73714	1012 bp downstream
Xrra1	X-ray radiation resistance associated 1	1238 bp upstream