rs31517978 SNP Detail

Summary

• ID
  rs31517978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185020045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGACTAAAGG TATGCACCAC CATGCCCAGC TCTTAACTCA AGAGTTCAAA ACGACAAGTT
  CTAGAGACAG TGGCAATGCC ACTACTCAAA ACTTCAGTTA CACAAAAGGA GCCACAACTT
  TCTCCACTGT TCCTGTTAAT GAAGATGAAT CAAGGTGACA GCCCTTTGAA CAGTGCACAG
  AAATCCTGTG ATAAAAAGTC TGCCCAGCCC TTTATAAGAA TGGCTAATGG TATTTTAATT
  AGGATATGCA TAAAAGGAAA TTTTAGAATT TACACAGGAT GGGTCAGCGG GGCTGGGCCA
  Y
  ATTAGGCACT GTATCAGAAC ACGAGGGGGG AAAGACTCTG TGACAGTCAC TCATGGGTGA
  GAAGGAACTG TCCCGGCCTC AGCTTCCGTT CCCAGAGCCC TGAGACCTGG CTCAGCCAGT
  CTTGAGGTAG CCTAGTCCCA TGGAAAGCTG GGGGTGACAT CAACTATTCA GTCCCTGCTC
  ACTCTTCTCA CCTTCTAGAT TGATGACGAA TGTCCCCGTG AGCTCAATGT CACCTGCAGT
  TCTTTCCCGT GGCTCCTGAG CCAGCAATGT CGTCTGGGAA GCCATCATCA GCTCATTCAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45041325	mCV24554599	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146426563	ENSMUSSNP6132875	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31517978					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185020045 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Rab3gap2	RAB3 GTPase activating protein subunit 2	1089 bp downstream