rs31518216 SNP Detail

Summary

• ID
  rs31518216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC AGAAACAAAG GAACGGAAAG
  R
  AAGGTTGCCG AGGCAGCAGT GCGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39297119	mCV23057141	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss62393422	NES17236646	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		A	G	G		G
ss139557226	ENSMUSSNP5149344	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss324635248	CHEV_14_54796312	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31518216					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393422	NES17236646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414094 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	1284 bp upstream
Traj41	T cell receptor alpha joining 41	312 bp downstream
Traj42	T cell receptor alpha joining 42	801 bp downstream
Traj43	T cell receptor alpha joining 43	1839 bp downstream
Tssr125564	transcription start site region 125564	1758 bp downstream
Tssr125565	transcription start site region 125565	1669 bp downstream
Tssr125566	transcription start site region 125566	655 bp downstream
Tssr125567	transcription start site region 125567	418 bp downstream
Tssr125568	transcription start site region 125568	401 bp downstream
Tssr125569	transcription start site region 125569	381 bp downstream
Tssr125570	transcription start site region 125570	352 bp downstream
Tssr128543	transcription start site region 128543	20 bp downstream