rs31519798 SNP Detail

Summary

• ID
  rs31519798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCCCAG GACCCACATC
  AGGCAGCCTG CAATTTCAGC TCCAGGGGGA TCTTATGTCT GCTTCTGGCT TCCTCTAGCG
  ACTGCTACAC ATGTAGCGTT TTTTCACTCA CACACATATT CTAGGAACCT TAAAGACCCA
  CAAATCCTGC ATCCCCCTCA TTTGCTTCCT CATACACTAG GCTAGCTGGC CAGAGAGCTT
  R
  CAGGGATGTC TCCTCACTCA AGACATCTGT CTGGCTGTAA CAGCTGGGTT TTACAGAAAG
  GTAAAGCCAC AGCGTCTGGT TTTCCATGAA TCCTCACGAT TGCTTTGCAA GCACTTTACC
  CACTTACCAC CTCTTCATAT ATACTATATT TTCATTAATA AAATTCTAGC ATTGTCTACT
  GGCTTAAATT ATGGTAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47061580	NES11269287	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		A
ss323886804	CHEV_12_8927305	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31519798					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061580	NES11269287	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	899 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	1573 bp upstream
Rr403227	regulatory region 403227	1306 bp upstream
Rr462715	regulatory region 462715	609 bp proximal
Rr462716	regulatory region 462716	1110 bp proximal
Rr462717	regulatory region 462717	1247 bp proximal
Rr462718	regulatory region 462718	1350 bp proximal
Tssr112751	transcription start site region 112751	1099 bp upstream
Tssr112752	transcription start site region 112752	1188 bp upstream
Tssr112753	transcription start site region 112753	1208 bp upstream
Tssr112754	transcription start site region 112754	1518 bp upstream
Tssr112755	transcription start site region 112755	1543 bp upstream
Tssr112756	transcription start site region 112756	1562 bp upstream
Tssr115725	transcription start site region 115725	1345 bp downstream