rs31519800 SNP Detail

Summary

• ID
  rs31519800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCCTC TAGCGACTGC
  TACACATGTA GCGTTTTTTC ACTCACACAC ATATTCTAGG AACCTTAAAG ACCCACAAAT
  CCTGCATCCC CCTCATTTGC TTCCTCATAC ACTAGGCTAG CTGGCCAGAG AGCTTGCAGG
  GATGTCTCCT CACTCAAGAC ATCTGTCTGG CTGTAACAGC TGGGTTTTAC AGAAAGGTAA
  R
  GCCACAGCGT CTGGTTTTCC ATGAATCCTC ACGATTGCTT TGCAAGCACT TTACCCACTT
  ACCACCTCTT CATATATACT ATATTTTCAT TAATAAAATT CTAGCATTGT CTACTGGCTT
  AAATTATGGT AAAGGCATGG ATTTTGTCCT GACATCTCTT CCCTTCCTCT TTCCAAAATA
  CTTTTGAGGT TCTTTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47061583	NES11269289	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss323886805	CHEV_12_8927370	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31519800					SNP	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061583	NES11269289	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	834 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	1508 bp upstream
Rr403227	regulatory region 403227	1241 bp upstream
Rr462715	regulatory region 462715	544 bp proximal
Rr462716	regulatory region 462716	1045 bp proximal
Rr462717	regulatory region 462717	1182 bp proximal
Rr462718	regulatory region 462718	1285 bp proximal
Tssr112751	transcription start site region 112751	1034 bp upstream
Tssr112752	transcription start site region 112752	1123 bp upstream
Tssr112753	transcription start site region 112753	1143 bp upstream
Tssr112754	transcription start site region 112754	1453 bp upstream
Tssr112755	transcription start site region 112755	1478 bp upstream
Tssr112756	transcription start site region 112756	1497 bp upstream
Tssr115725	transcription start site region 115725	1280 bp downstream